X-ray crystallography

XDS

X-ray Detector Software for processing single-crystal monochromatic diffraction data recorded by the rotation method. 

 

HKL 2000 (manual)

The HKL suite is a package of programs intended for the analysis of X-ray diffraction data collected from single crystals, and consists of three programs: XdisplayF for visualization of the diffraction pattern, Denzo for data reduction and integration, and Scalepack for merging and scaling of the intensities obtained by Denzo or other programs. 

 

CCP4

CCP4 produce and support, integrated suite of programs that allows researchers to determine macromolecular structures by X-ray crystallography, and other biophysical techniques.

 

CNS solve

Crystallography & NMR System (CNS) is the result of an international collaborative effort among several research groups. The program has been designed to provide a flexible multi-level hierachical approach for the most commonly used algorithms in macromolecular structure determination. Highlights include heavy atom searching, experimental phasing (including MAD and MIR), density modification, crystallographic refinement with maximum likelihood targets, and NMR structure calculation using NOEs, J-coupling, chemical shift, and dipolar coupling data

Phenix

PHENIX is a software suite for the automated determination of molecular structures using X-ray crystallography and other methods.

 

Solve/Resolve

Automated crystallographic structure solution for MIR, SAD, and MAD (Solve) and statistical density modification, local pattern matching, automated model-building, automated ligand-fitting, and prime-and-switch minimum bias phasing (Resolve).

 

USF

Software and Resources for Macromolecular Crystallography and Structural Biology.

SHELX

SHELX is a set of programs for the determination of small (SM) and macromolecular (MM) crystal structures by single crystal X-ray and neutron diffraction.

SHARP/autpSHARP

Experimental phasing and density modification

Molecular graphics and modeling tools

COOT
Modeling software for building and refining atomic structures

 

PyMol
Molecular graphics viewer
UCSF CHIMERA
Advanced molecular graphics include volume viewer and fitting for EM data.

 

HIC-Up
Small molecules and ligands database 

Moshe Dessau, PhD.    |    moshe.dessau@biu.ac.il    |    Tel. +972-72-2644905    |    The Faculty of Medicine in the Galilee, Bar Ilan University

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